Papers

all AFM 1 Bayesian-optimisation 1 LDL-cholesterol 1 LSCM 1 ODE-bifurcation 4 Purkinje-fibers 1 agent-based-model 4 atherosclerosis 20 biological-suture 1 cardiac-ECM 1 cardiac-mechanics 1 causal-inference 2 cell-division 1 cell-growth 1 cell-mechanics 1 cell-membrane 1 cell-migration 9 cell-plasticity 1 clinical-review 1 clinical-trial 1 continuum-mechanics 7 digital-twin 1 drug-delivery 1 elastin 1 endocytosis 1 finite-element 6 histology 1 interlocking-structure 1 lipid-bilayer 1 lipidomics 1 machine-learning 2 melanoma 1 multiscale-modeling 1 nanomedicine 1 nanoparticle 1 parameter-inference 1 physics-informed-neural-network 1 porcine-heart 1 protein-corona 1 reaction-diffusion 4 regulatory-inference 1 reproducibility 1 secondary-prevention 1 single-cell-multiomics 1 stochastic-process 6 structural-identifiability 1 tissue-engineering 1 toughening 1 variational-autoencoder 1 vascular-G&R 6 wearables-cardio 1 wound-healing 1

A quantitative model for the emergent population dynamics of the melanoma MITF rheostat

Chambers, Keith L., White, Richard M. et al. · 2026 ·

📄 quick · #melanoma #cell-plasticity #stochastic-process

Smooth muscle cells in atherosclerosis: essential but overlooked translational perspectives

Azar, Pascal, Jarr, Kai-Uwe et al. · 2025 · European Heart Journal

🔬 deep · #atherosclerosis #cell-migration #vascular-G&R

Mechanics of elliptical interlocking sutures in biological interfaces

Xing, Yun, Yang, Can et al. · 2024 · Acta Biomaterialia

📄 quick · #continuum-mechanics #finite-element #biological-suture

Coronary microvascular function and atherosclerotic plaque burden in ischaemia and no obstructive coronary arteries: a secondary analysis of the CorMicA trial

Ang, Daniel TY, Carberry, Jaclyn et al. · 2024 · Heart

📄 quick · #atherosclerosis

Validation and Reproducibility of Total Plaque Thickness in Carotid and Femoral Arteries Using Ultrasound

Austad, Gunnar, Geitung, Jonn Terje et al. · 2024 · Ultrasound in Medicine & Biology

📄 quick · #atherosclerosis

Structural identifiability analysis of linear reaction–advection–diffusion processes in mathematical biology

Browning, Alexander P., Taşcă, Maria et al. · 2024 · Proc. R. Soc. A

📄 quick · #reaction-diffusion #cell-migration #structural-identifiability

Spatial distribution and network morphology of epicardial, endocardial, interstitial, and Purkinje cell-associated elastin fibers in porcine left ventricle

Shi, Xiaodan, Zhang, Song et al. · 2023 · Bioactive Materials

🔬 deep · #cardiac-ECM #elastin #histology

Systems immunology-based drug repurposing framework to target inflammation in atherosclerosis

Amadori, Letizia, Calcagno, Claudia et al. · 2023 · Nature Cardiovascular Research

📄 quick · #atherosclerosis

Novel and future lipid-modulating therapies for the prevention of cardiovascular disease

Brandts, Julia, Ray, Kausik K. · 2023 · Nature Reviews Cardiology

📄 quick · #atherosclerosis

Stiffness Sensing by Smooth Muscle Cells: Continuum Mechanics Modeling of the Acto-Myosin Role

Karkhaneh Yousefi, Ali Akbar, Petit, Claudie et al. · 2023 · J. Mech. Behav. Biomed. Mater.

🔬 deep · #continuum-mechanics #finite-element #vascular-G&R

Atherosclerosis: Recent developments

Bjorkegren, Johan L.M., Lusis, Aldons J. · 2022 · Cell

📄 quick · #atherosclerosis

Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle

Borowska, Agnieszka, Gao, Hao et al. · 2022 · Int. J. Numer. Meth. Biomed. Engng.

🔬 deep · #finite-element #continuum-mechanics #Bayesian-optimisation

A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia

Celora, Giulia L., Bader, Samuel B. et al. · 2022 · Journal of Theoretical Biology

📄 quick · #ODE-bifurcation #stochastic-process

A novel numerical and artificial intelligence based approach to study anti-angiogenic drugs: Endostatin

Akbarpour Ghazani, Mehran, Soltani, M. et al. · 2022 · Applied Mathematical Modelling

🔬 deep · #vascular-G&R #agent-based-model

Multi-omics single-cell data integration and regulatory inference with graph-linked embedding

Cao, Zhi-Jie, Gao, Ge · 2022 · Nature Biotechnology

📄 quick · #single-cell-multiomics #variational-autoencoder #regulatory-inference

Mathematical investigation into the role of macrophage heterogeneity on the temporal and spatio-temporal dynamics of non-small cell lung cancers

Bartha, Liza, Eftimie, Raluca · 2022 · J. Theor. Biol.

📄 quick · #reaction-diffusion #ODE-bifurcation #cell-migration

Macrophage-targeted nanomedicine for the diagnosis and treatment of atherosclerosis

Chen, Wei, Schilperoort, Maaike et al. · 2022 · Nature Reviews Cardiology

📄 quick · #atherosclerosis

Randomized, Placebo-Controlled Phase 2b Study to Evaluate the Safety and Efficacy of Recombinant Human Lecithin Cholesterol Acyltransferase in Acute ST-Segment–Elevation Myocardial Infarction: Results of REAL-TIMI 63B

Bonaca, Marc P., Morrow, David A. et al. · 2022 · Circulation

📄 quick · #atherosclerosis

Effect of statin therapy on muscle symptoms: an individual participant data meta-analysis of large-scale, randomised, double-blind trials

Cholesterol Treatment Trialists' Collaboration · 2022 · The Lancet

📄 quick · #causal-inference #atherosclerosis

Management of Antithrombotic Therapy after Acute Coronary Syndromes

Rodriguez, Fatima, Harrington, Robert A. · 2021 · N Engl J Med

📄 quick · #atherosclerosis

BioDynaMo: a modular platform for high-performance agent-based simulation

Breitwieser, Lukas, Hesam, Ahmad et al. · 2021 · Bioinformatics

📄 quick · #agent-based-model #cell-migration

Atherosclerotic Carotid Plaque Composition and Incident Stroke and Coronary Events

Bos, Daniel, Arshi, Banafsheh et al. · 2021 · J. Am. Coll. Cardiol.

📄 quick · #atherosclerosis

Macroevolutionary stability predicts interaction patterns of species in seed dispersal networks

Burin, Gustavo, Guimarães Jr., Paulo R. et al. · 2021 · Science

📄 quick · #agent-based-model #stochastic-process

Phenotypic Modulation of Macrophages and Vascular Smooth Muscle Cells in Atherosclerosis—Nitro-Redox Interconnections

Bonetti, Justine, Corti, Alessandro et al. · 2021 · Antioxidants

🔬 deep · #atherosclerosis #vascular-G&R

Mathematical modeling of plaque progression and associated microenvironment: How far from predicting the fate of atherosclerosis?

Cai, Yan, Li, Zhiyong · 2021 · Computer Methods and Programs in Biomedicine

📄 quick · #atherosclerosis #continuum-mechanics

Moving towards reproducible machine learning

Nature Computational Science, Editorial · 2021 · Nature Computational Science

📄 quick · #machine-learning #reproducibility

Smart wearable devices in cardiovascular care: where we are and how to move forward

Bayoumy, Karim, Gaber, Mohammed et al. · 2021 · Nature Reviews Cardiology

📄 quick · #wearables-cardio #clinical-review

A Comparison of Two LDL Cholesterol Targets after Ischemic Stroke

Amarenco, P., Kim, J.S. et al. · 2020 · N. Engl. J. Med.

📄 quick · #atherosclerosis #clinical-trial #LDL-cholesterol

Approximate Bayesian model inversion for PDEs with heterogeneous and state-dependent coefficients

Barajas-Solano, D.A., Tartakovsky, A.M. · 2019 · Journal of Computational Physics

📄 quick · #stochastic-process #finite-element #causal-inference

Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences

Alber, Mark, Buganza Tepole, Adrian et al. · 2019 · npj Digital Medicine

📄 quick · #multiscale-modeling #machine-learning #physics-informed-neural-network

Size control in mammalian cells involves modulation of both growth rate and cell cycle duration

Cadart, Clotilde, Monnier, Sylvain et al. · 2018 · Nature Communications

📄 quick · #cell-growth

Cellular uptake of nanoparticles: journey inside the cell

Behzadi, Shahed, Serpooshan, Vahid et al. · 2017 · Chem. Soc. Rev.

📄 quick · #nanoparticle #cell-membrane #endocytosis

Well-posedness and large deviations for a class of SPDEs with Lévy noise

Chen, Yong, Gao, Hongjun · 2017 · J. Differential Equations

📄 quick · #stochastic-process

Role of biomechanical forces in the natural history of coronary atherosclerosis

Brown, Adam J., Teng, Zhongzhao et al. · 2016 · Nat. Rev. Cardiol.

📄 quick · #atherosclerosis #continuum-mechanics #finite-element

A morphoelastic model for dermal wound closure

Bowden, L. G., Byrne, H. M. et al. · 2016 · Biomech Model Mechanobiol

📄 quick · #continuum-mechanics #wound-healing

Precision medicine in cardiology

Antman, Elliott M., Loscalzo, Joseph · 2016 · Nat. Rev. Cardiol.

📄 quick · #atherosclerosis

Anti-inflammatory therapies for atherosclerosis

Bäck, Magnus, Hansson, Göran K. · 2015 · Nat. Rev. Cardiol.

📄 quick · #atherosclerosis

Dividing Cells Regulate Their Lipid Composition and Localization

Atilla-Gokcumen, G. Ekin, Muro, Eleonora et al. · 2014 · Cell

📄 quick · #lipidomics #cell-mechanics #AFM

Remodelling the extracellular matrix in development and disease

Bonnans, Caroline, Chou, Jonathan et al. · 2014 · Nat. Rev. Mol. Cell Biol.

🔬 deep · #vascular-G&R #cell-migration

Mechanisms of Plaque Formation and Rupture

Bentzon, Jacob Fog, Otsuka, Fumiyuki et al. · 2014 · Circulation Research

📄 quick · #atherosclerosis

Open problems in computational vascular biomechanics: Hemodynamics and arterial wall mechanics

Taylor, C.A., Humphrey, J.D. · 2009 · Comput. Methods Appl. Mech. Engrg.

🔬 deep · #vascular-G&R #finite-element #continuum-mechanics

Aging and immortality in a cell proliferation model

Antal, T., Blagoev, K.B. et al. · 2007 · J. Theor. Biol.

📄 quick · #stochastic-process #ODE-bifurcation

Inflammatory monocytes recruited after skeletal muscle injury switch into antiinflammatory macrophages to support myogenesis

Arnold, Ludovic, Henry, Adeline et al. · 2007 · J. Exp. Med.

📄 quick · #cell-migration

Multi-scale modeling of a wound-healing cell migration assay

Cai, Anna Q., Landman, Kerry A. et al. · 2007 · Journal of Theoretical Biology

📄 quick · #cell-migration #reaction-diffusion #agent-based-model

Carotid Plaque Ultrasonic Heterogeneity and Severity of Stenosis

AbuRahma, Ali F., Wulu, John T. et al. · 2002 · Stroke

📄 quick · #atherosclerosis

Lipid Lowering and Plaque Regression: New Insights Into Prevention of Plaque Disruption and Clinical Events in Coronary Disease

Brown, B. Greg, Zhao, Xue-Qiao et al. · 1993 · Circulation

📄 quick · #atherosclerosis

Chemo-orientation

Bell, William J., Tobin, Thomas R. · 1982 · Biol. Rev.

📄 quick · #cell-migration

Patterns of Cell Division and Cell Movement in the Formation of the Imaginal Nervous System in Drosophila melanogaster

White, Kalpana, Kankel, Douglas R. · 1978 · Dev. Biol.

📄 quick · #cell-migration